Knowledgebase: SSL Technical FAQs
Can I have 2 SSL certificates on the same domain, but have the second one for whateverdomain/myfolder?

The answer is no.

With an SSL certificate the Fully qualified Domain Name (FQDN) does not include the '/', or anything after it. or the https:// at the beginning.
So, as an example, if I wanted my secure area to be https://support.comodo.com/myfolder the FQDN is support.comodo.com
Therefore you could not get a certificate for support.comodo.com/myfolder as /folder is not part of the FQDN.

We would recommend getting a second certificate for something like folder.comodo.com

Please note that you will need a second public facing IP for a second SSL enabled domain.

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